PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G053100.1.p
Common NameGLYMA_11G053100, LOC100127371
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 322aa    MW: 35021.6 Da    PI: 10.3451
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G053100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31250307359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Glyma.11G053100.1.p 250 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHT 307
                          99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-16200246IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.1E-33236307IPR003657WRKY domain
PROSITE profilePS5081130.894243309IPR003657WRKY domain
SuperFamilySSF1182903.79E-27245308IPR003657WRKY domain
SMARTSM007742.1E-38248308IPR003657WRKY domain
PfamPF031062.9E-27250306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAVDLMMGYR NHNFAQENAV REAASGLESV EKLIKLLSQT QQQFQTTSNS TSNSKSSMAN  60
IDTDYRAVAD VAVSKFKKVI SLLGSSRTGH ARFRRAPVAP PPPPAEPRVY RATPVQQIPP  120
PTLHTHAVVT DHSLVPKIER KDSSKTINFS YSNSFVSSLT AGDTDTKQPC SSSPSTAFQI  180
TNLSQVSSGG KPPLSSSSLK RKCSSENLGS AKCGSSSSRC HCSKKSRKMR QKRVVRVPAI  240
SLKMADIPPD DYSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERAL DDPSMLVVTY  300
EGEHNHTLSA AEATNLILES S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-222463101578Probable WRKY transcription factor 4
2lex_A7e-222463101578Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.548160.0meristem| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5876990.0KM587699.1 Glycine max clone GmWRKY35 WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539339.10.0PREDICTED: probable WRKY transcription factor 15 isoform X1
SwissprotO221764e-89WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A0B2SCV50.0A0A0B2SCV5_GLYSO; Putative WRKY transcription factor 15
TrEMBLI1LHB20.0I1LHB2_SOYBN; Uncharacterized protein
STRINGGLYMA11G05650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Representative plantOGRP8844615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.13e-65WRKY DNA-binding protein 15